Description

Calculates genome-wide sequencing coverage.

Input

Name
Description
Pattern

0 ()

1 ()

2 ()

3 ()

0 ()

1 ()

Output

Name
Description
Pattern

global_txt ()

summary_txt ()

regions_txt ()

per_base_d4 ()

per_base_bed ()

per_base_csi ()

regions_bed ()

regions_csi ()

quantized_bed ()

quantized_csi ()

thresholds_bed ()

thresholds_csi ()

versions ()

Tools

mosdepth Documentation

Fast BAM/CRAM depth calculation for WGS, exome, or targeted sequencing.

doi: 10.1093/bioinformatics/btx699License: MIT
nf-core pipelines with this module
blobtoolkit
Authors