Description

msisensor2 detection of MSI regions.

Input

Name
Description
Pattern

fasta (file)

Path to reference genome.

*.fasta

output (string)

Name of output MSI scan to write.

Output

Name
Description
Pattern

0 ()

0 ()

Tools

msisensor2 Documentation

MSIsensor2 is a novel algorithm based machine learning, featuring a large upgrade in the microsatellite instability (MSI) detection for tumor only sequencing data, including Cell-Free DNA (cfDNA), Formalin-Fixed Paraffin-Embedded(FFPE) and other sample types. The original MSIsensor is specially designed for tumor/normal paired sequencing data.

https://github.com/niu-lab/msisensor2License: GPL-3.0
Authors