modules/
msisensor2_scan

msisensor2 detection of MSI regions.

microsatellite instability detection tumor

https://github.com/nf-core/modules/tree/master/modules/nf-core/msisensor2/scan

Description

msisensor2 detection of MSI regions.

Input

Name

Description

Pattern

`0` ()

Output

Name

Description

Pattern

`scan` ()

`versions` ()

Tools

msisensor2 Documentation

MSIsensor2 is a novel algorithm based machine learning, featuring a large upgrade in the microsatellite instability (MSI) detection for tumor only sequencing data, including Cell-Free DNA (cfDNA), Formalin-Fixed Paraffin-Embedded(FFPE) and other sample types. The original MSIsensor is specially designed for tumor/normal paired sequencing data.

https://github.com/niu-lab/msisensor2License: GPL-3.0