Description

MSIsensor-pro evaluates Microsatellite Instability (MSI) for cancer patients with next generation sequencing data. It accepts the whole genome sequencing, whole exome sequencing and target region (panel) sequencing data as input

Input

Name
Description
Pattern

0 ()

1 ()

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5 ()

0 ()

0 ()

Output

Name
Description
Pattern

output_report ()

output_dis ()

output_germline ()

output_somatic ()

versions ()

Tools

msisensorpro Documentation

Microsatellite Instability (MSI) detection using high-throughput sequencing data.

https://github.com/xjtu-omics/msisensor-prodoi: 10.1016/j.gpb.2020.02.001License: Custom Licence
Authors