Description

A small Java tool to calculate ratios between MT and nuclear sequencing reads in a given BAM file.

Input

Name
Description
Pattern

0 ()

1 ()

mt_id (string)

Identifier of the contig/chromosome of interest (e.g. chromosome, contig) as in the aligned against reference FASTA file, e.g. mt or chrMT for mitochondria

Output

Name
Description
Pattern

0 ()

0 ()

0 ()

Tools

mtnucratio Documentation

A small tool to determine MT to Nuclear ratios for NGS data.

doi: 10.1186/s13059-016-0918-zLicense: GPL v3
Authors