Description

Convert genomic BAM/SAM files to transcriptomic BAM/RAD files.

Input

Name
Description
Pattern

0 ()

1 ()

index (directory)

Annotation index created by mudskipper/index

gtf (file)

Annotation file

*.{gtf,gff,gff3}

rad (string)

File type

Output

Name
Description
Pattern

0 ()

0 ()

0 ()

Tools

mudskipper Documentation

mudskipper is a tool for converting genomic BAM/SAM files to transcriptomic BAM/RAD files.

License: BSD 3-clause
Authors