Description

Muscle is a program for creating multiple alignments of amino acid or nucleotide sequences. This particular module uses the super5 algorithm for very big alignments. It can permutate the guide tree according to a set of flags.

Input

Name
Description
Pattern

0 ()

1 ()

compress (boolean)

Flag representing whether the output MSA should be compressed. Set to true to enable/false to disable compression. Compression is done using pigz, and is multithreaded.

Output

Name
Description
Pattern

0 ()

0 ()

Tools

muscle -super5 Documentation

Muscle v5 is a major re-write of MUSCLE based on new algorithms.

doi: 10.1101/2021.06.20.449169License: Public Domain

pigz Documentation

Parallel implementation of the gzip algorithm.

Authors