Description

SARS-CoV-2 genome clade assignment, mutation calling, and sequence quality checks (C++ implementation)

Input

Name
Description
Pattern

0 ()

1 ()

0 ()

Output

Name
Description
Pattern

csv ()

csv_errors ()

csv_insertions ()

tsv ()

json ()

json_auspice ()

ndjson ()

fasta_aligned ()

fasta_translation ()

nwk ()

versions ()

Tools

nextclade Documentation

SARS-CoV-2 genome clade assignment, mutation calling, and sequence quality checks

License: MIT
Authors