Description

Performs fastq alignment to a fasta reference using NextGenMap

Input

Name
Description
Pattern

0 ()

1 ()

fasta (file)

Genomic reference fasta file

*.{fa,fa.gz,fas,fas.gz,fna,fna.gz,fasta,fasta.gz}

Output

Name
Description
Pattern

0 ()

0 ()

Tools

bwa Documentation

NextGenMap is a flexible highly sensitive short read mapping tool that handles much higher mismatch rates than comparable algorithms while still outperforming them in terms of runtime

doi: 10.1093/bioinformatics/btt468License: MIT
Authors