Description

write your description here

Input

Name
Description
Pattern

meta (map)

Groovy Map containing sample information e.g. [ id:'test', single_end:false ]

reads (file)

FASTQ or FASTA file (ideally uncompressed, but not required)

*.{fasta,fna,fas,fa,fastq,fq,fasta.gz,fna.gz,fas.gz,fa.gz,fastq.gz,fq.gz}

format (string)

File format of input file

fasta|fastq

mode (string)

Mode of redundancy estimation

kmer|alignment

Output

Name
Description
Pattern

meta (map)

Groovy Map containing sample information e.g. [ id:'test', single_end:false ]

versions (file)

File containing software versions

versions.yml

npa (file)

Raw redundancy values

*.npa

npc (file)

Mates distribution file

*.npc

npl (file)

Log file

*.npl

npo (file)

Redundancy summary file

*.npo

Tools

nonpareil Documentation

Estimate average coverage and create curves for metagenomic datasets

https://github.com/lmrodriguezr/nonpareildoi: 10.1128/msystems.00039-License:
Authors