Description

Calculate metagenome redundancy curve from FASTQ files

Input

Name
Description
Pattern

0 ()

1 ()

format (string)

File format of input file

fasta|fastq

mode (string)

Mode of redundancy estimation

kmer|alignment

Output

Name
Description
Pattern

0 ()

0 ()

0 ()

0 ()

0 ()

Tools

nonpareil Documentation

Estimate average coverage and create curves for metagenomic datasets

https://github.com/lmrodriguezr/nonpareildoi: 10.1128/msystems.00039-License: Artistic License 2.0
Authors