Description

oarfish is a program for quantifying transcript-level expression from long-read sequencing technologies. Project an existing spliced genome BAM (e.g. from minimap2 -ax splice) onto the annotated transcripts, then quantify.

Input

Name
Description
Pattern

0 ()

1 ()

0 ()

1 ()

0 ()

1 ()

Output

Name
Description
Pattern

0 ()

0 ()

0 ()

0 ()

0 ()

0 ()

Tools

oarfish Documentation

oarfish is a tool for fast, accurate and versatile transcript quantification from long-read RNA-seq data

doi: 10.1101/2024.02.28.582591v1License: BSD-3-clause
Authors