Description

Draw a genome-wide structural variant Circos plot from an OctopuSV SVCF file.

Input

Name
Description
Pattern

0 ()

1 ()

2 ()

fai (file)

Optional reference FASTA index used to define chromosome sizes; built-in hg38 sizes are used when absent

*.fai

Output

Name
Description
Pattern

0 ()

0 ()

0 ()

Tools

octopusv Documentation

End-to-end structural variant post-processing: standardize, merge, compare, and export SVs.

https://github.com/ylab-hi/octopusVdoi: 10.1093/bioinformatics/btaf599License: MIT
Authors