Description

Calls CNVs in bam files from tumor patients

Input

Name
Description
Pattern

0 ()

1 ()

2 ()

3 ()

4 ()

bed (file)

annotated BED file containing target regions

*.bed

fasta (file)

genome FASTA file

*.fasta

Output

Name
Description
Pattern

0 ()

0 ()

0 ()

0 ()

Tools

oncocnv Documentation

a package to detect copy number changes in Deep Sequencing data

https://github.com/BoevaLab/ONCOCNV/doi: 10.1093/bioinformatics/btu436
Authors