Description

This tool is the equivalent of fq2bam for RNA-Seq samples, receiving inputs in FASTQ format, performing alignment with the splice-aware STAR algorithm, optionally marking of duplicate reads, and outputting an aligned BAM file ready for variant and fusion calling.

Input

Name
Description
Pattern

0 ()

1 ()

0 ()

1 ()

0 ()

1 ()

qc_metrics (boolean)

Optionally report QC metrics

mark_duplicates (boolean)

Optionally mark duplicates

Output

Name
Description
Pattern

0 ()

0 ()

0 ()

0 ()

0 ()

0 ()

0 ()

0 ()

0 ()

0 ()

0 ()

0 ()

0 ()

0 ()

0 ()

0 ()

0 ()

0 ()

0 ()

0 ()

Tools

parabricks Documentation

NVIDIA Clara Parabricks GPU-accelerated genomics tools

License: https://docs.nvidia.com/clara/parabricks/latest/eula.html
Authors