Description

Convert an SDRF (Sample and Data Relationship Format) file into a pipeline-specific samplesheet/configuration using the parse_sdrf convert-<format> subcommands of the sdrf-pipelines package. The chosen format selects the subcommand; the module owns the output filenames and emits one tuple per supported format (mhcquant, openms, maxquant, msstats, normalyzerde, diann).

Input

Name
Description
Pattern

0 ()

1 ()

2 ()

3 ()

format (string)

Target converter. One of: mhcquant, openms, maxquant, msstats, normalyzerde, diann. Selects the parse_sdrf convert-<format> subcommand.

Output

Name
Description
Pattern

0 ()

0 ()

0 ()

0 ()

0 ()

0 ()

0 ()

Tools

sdrf-pipelines Documentation

A set of tools to validate and convert SDRF files for proteomics pipelines.

doi: 10.1021/acs.jproteome.1c00505License: Apache-2.0
Authors