Description

Runs PEKA CLIP peak k-mer analysis

Input

Name
Description
Pattern

0 ()

1 ()

0 ()

1 ()

fasta (file)

Genome reference sequence used

*.{fa,fasta}

fai (file)

FAI file corresponding to the reference sequence

*.{fai}

gtf (file)

A segmented GTF used to annotate peaks

*.{gtf}

Output

Name
Description
Pattern

0 ()

0 ()

0 ()

0 ()

0 ()

0 ()

0 ()

0 ()

Tools

peka Documentation

Positionally-enriched k-mer analysis (PEKA) is a software package for identifying enriched protein-RNA binding motifs from CLIP datasets

doi: 10.1186/s13059-022-02755-2License: GPL v3
Authors