Description

Collect metrics from a RNAseq BAM file

Input

Name
Description
Pattern

0 ()

1 ()

ref_flat (file)

Genome ref_flat file

fasta (file)

Genome fasta file

rrna_intervals (file)

Interval file of ribosomal RNA regions

Output

Name
Description
Pattern

0 ()

0 ()

0 ()

Tools

picard Documentation

A set of command line tools (in Java) for manipulating high-throughput sequencing (HTS) data and formats such as SAM/BAM/CRAM and VCF.

https://github.com/broadinstitute/picardLicense: MIT
Authors