Description

Collect metrics about coverage and performance of whole genome sequencing (WGS) experiments.

Input

Name
Description
Pattern

0 ()

1 ()

2 ()

0 ()

1 ()

0 ()

1 ()

intervallist (file)

Picard Interval List. Defines which contigs to include. Can be generated from a BED file with GATK BedToIntervalList.

Output

Name
Description
Pattern

0 ()

0 ()

Tools

picard Documentation

A set of command line tools (in Java) for manipulating high-throughput sequencing (HTS) data and formats such as SAM/BAM/CRAM and VCF.

License: MIT
Authors