Description

Computes/Extracts the fingerprint genotype likelihoods from the supplied file. It is given as a list of PLs at the fingerprinting sites.

Input

Name
Description
Pattern

0 ()

1 ()

2 ()

haplotype_map (file)

A file of haplotype information. The file lists a set of SNPs, optionally arranged in high-LD blocks, to be used for fingerprinting. See https://software.broadinstitute.org/gatk/documentation/article?id=9526 for details.

*.{txt,vcf,vcf.gz}

fasta (file)

Reference sequence file

*.{fasta,fna,fa}

fasta_fai (file)

Reference sequence index file

*.{fai}

sequence_dictionary (file)

Reference sequence dictionary file

Output

Name
Description
Pattern

0 ()

0 ()

0 ()

Tools

picard Documentation

A set of command line tools (in Java) for manipulating high-throughput sequencing (HTS) data and formats such as SAM/BAM/CRAM and VCF.

https://github.com/broadinstitute/picard/License: MIT
Authors