Description

Automatically improve draft assemblies and find variation among strains, including large event detection

Input

Name
Description
Pattern

0 ()

1 ()

0 ()

1 ()

2 ()

pilon_mode (string)

Indicates the type of bam file used (frags for paired-end sequencing of DNA fragments, such as Illumina paired-end reads of fragment size <1000bp, jumps for paired sequencing data of larger insert size, such as Illumina mate pair libraries, typically of insert size >1000bp, unpaired for unpaired sequencing reads, bam will automatically classify the BAM as one of the three types above (version 1.17 and higher).

Output

Name
Description
Pattern

0 ()

0 ()

0 ()

0 ()

0 ()

0 ()

Tools

pilon Documentation

Pilon is an automated genome assembly improvement and variant detection tool.

https://github.com/broadinstitute/pilondoi: 10.1371/journal.pone.0112963License: GPL-2.0-or-later
Authors