Description

Pindel can detect breakpoints of large deletions, medium sized insertions, inversions, tandem duplications and other structural variants at single-based resolution from next-gen sequence data

Input

Name
Description
Pattern

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1 ()

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fasta (file)

Input reference genome fasta file

fai (file)

Input reference genome fasta index file

bed (file)

BED file containing regions of interest

Output

Name
Description
Pattern

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0 ()

0 ()

0 ()

0 ()

0 ()

0 ()

0 ()

0 ()

0 ()

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Tools

pindel Documentation

Pindel can detect breakpoints of large deletions, medium sized insertions, inversions, tandem duplications and other structural variants at single-based resolution from next-gen sequence data

License: GPL v3
Authors