Description

Create wiggle or bedGraph files from alignment files after applying a read mapping rule (e.g. to map ribosome-protected footprints at their P-sites), for visualization in a genome browser

Input

Name
Description
Pattern

0 ()

1 ()

2 ()

3 ()

mapping_rule (string)

Read mapping rule. Use 'fiveprime_variable' with p_offsets file to map reads to P-sites.

Output

Name
Description
Pattern

0 ()

0 ()

Tools

plastid Documentation

Nucleotide-resolution analysis of next-generation sequencing and genomics data

https://github.com/joshuagryphon/plastiddoi: 10.1186/s12864-016-3278-xLicense: BSD-3-clause
Authors