Description

Platypus is a tool that efficiently and accurately calling genetic variants from next-generation DNA sequencing data

Input

Name
Description
Pattern

0 ()

1 ()

2 ()

3 ()

4 ()

fasta (file)

The reference fasta file

*.fa

fai (file)

Index of reference fasta file

*.fai

skipregions_file (file)

File with regions to skip, region as comma-separated list of chr:start-end, or just list of chr, or nothing

*.bed|*.txt|*.tab

Output

Name
Description
Pattern

0 ()

0 ()

0 ()

0 ()

Tools

platypus Documentation

Platypus is a tool designed for efficient and accurate variant-detection in high-throughput sequencing data.

https://github.com/andyrimmer/Platypusdoi: 10.1038/ng.3036License: BSD-3-clause
Authors