Description

Produce pruned set of variants in approximatelinkage equilibrium

Input

Name
Description
Pattern

0 ()

1 ()

2 ()

3 ()

win (integer)

Window size in variant count or kilobase (if the 'kb' modifier is present) units, a variant count to shift the window at the end of each step, and a variance inflation factor (VIF) threshold.

*.{}

step (integer)

Variant count to shift the window at the end of each step.

*.{}

r2 (float)

R squared threshold

*.{}

Output

Name
Description
Pattern

0 ()

0 ()

0 ()

Tools

plink2 Documentation

Whole genome association analysis toolset, designed to perform a range of basic, large-scale analyses in a computationally efficient manner

doi: 10.1186/s13742-015-0047-8License: GPL v3
Authors