Description
Produce a pruned subset of markers that are in approximate linkage equilibrium with each other.
Input
Name
Description
Pattern
Window size in variant count or kilobase (if the 'kb' modifier is present) units, a variant count to shift the window at the end of each step, and a variance inflation factor (VIF) threshold.
Tools
plink Documentation
Whole genome association analysis toolset, designed to perform a range of basic, large-scale analyses in a computationally efficient manner.
https://www.cog-genomics.org/plink/1.9/devLicense: GPL