Description

Produce a pruned subset of markers that are in approximate linkage equilibrium with each other.

Input

Name
Description
Pattern

0 ()

1 ()

2 ()

3 ()

window_size (string)

Window size in variant count or kilobase (if the 'kb' modifier is present) units, a variant count to shift the window at the end of each step, and a variance inflation factor (VIF) threshold.

variant_count (string)

Variant count to shift the window at the end of each step.

variance_inflation_factor (string)

Variance inflation factor (VIF) threshold. At each step, all variants in the current window with VIF exceeding the threshold are removed.

Output

Name
Description
Pattern

0 ()

0 ()

0 ()

Tools

plink Documentation

Whole genome association analysis toolset, designed to perform a range of basic, large-scale analyses in a computationally efficient manner.

https://www.cog-genomics.org/plink/1.9/devLicense: GPL
Authors