Description

Run all Portcullis steps in one go

Input

Name
Description
Pattern

0 ()

1 ()

0 ()

1 ()

0 ()

1 ()

Output

Name
Description
Pattern

log ()

pass_junctions_bed ()

pass_junctions_tab ()

intron_gff ()

exon_gff ()

spliced_bam ()

spliced_bai ()

versions ()

Tools

portcullis Documentation

Portcullis is a tool that filters out invalid splice junctions from RNA-seq alignment data. It accepts BAM files from various RNA-seq mappers, analyzes splice junctions and removes likely false positives, outputting filtered results in multiple formats for downstream analysis.

doi: 10.1101/217620
Authors