Description

Run PureCN workflow to normalize, segment and determine purity and ploidy

Input

Name
Description
Pattern

0 ()

1 ()

2 ()

normal_db (file)

normal pannel database

genome (string)

Genome build

Output

Name
Description
Pattern

0 ()

0 ()

0 ()

0 ()

0 ()

0 ()

0 ()

0 ()

0 ()

0 ()

0 ()

0 ()

Tools

purecn Documentation

Copy number calling and SNV classification using targeted short read sequencing

https://github.com/lima1/PureCNdoi: 10.1186/s13029-016-0060-z
Authors