Description

Run PureCN workflow to normalize, segment and determine purity and ploidy

Input

Name
Description
Pattern

0 ()

1 ()

2 ()

0 ()

0 ()

Output

Name
Description
Pattern

pdf ()

local_optima_pdf ()

seg ()

genes_csv ()

amplification_pvalues_csv ()

vcf_gz ()

variants_csv ()

loh_csv ()

chr_pdf ()

segmentation_pdf ()

multisample_seg ()

versions ()

Tools

purecn Documentation

Copy number calling and SNV classification using targeted short read sequencing

https://github.com/lima1/PureCNdoi: 10.1186/s13029-016-0060-z
Authors