Description

Evaluate alignment data

Input

Name
Description
Pattern

0 ()

1 ()

2 ()

gff (file)

Feature file with regions of interest

*.{gff,gtf,bed}

fasta (file)

Reference file of cram file

*.{fasta,fa,fna}

fasta_fai (file)

Index file for reference file

*.{fai}

Output

Name
Description
Pattern

0 ()

0 ()

Tools

qualimap Documentation

Qualimap 2 is a platform-independent application written in Java and R that provides both a Graphical User Interface and a command-line interface to facilitate the quality control of alignment sequencing data and its derivatives like feature counts.

doi: 10.1093/bioinformatics/bts503License: GPL-2.0-only
Authors