Description

Homology-based assembly patching: Make continuous joins and fill gaps in 'target.fa' using sequences from 'query.fa'

Input

Name
Description
Pattern

0 ()

1 ()

0 ()

1 ()

0 ()

1 ()

0 ()

1 ()

Output

Name
Description
Pattern

patch_fasta ()

patch_agp ()

patch_components_fasta ()

assembly_alignments ()

target_splits_agp ()

target_splits_fasta ()

qry_rename_agp ()

qry_rename_fasta ()

stderr ()

versions ()

Tools

ragtag Documentation

Fast reference-guided genome assembly scaffolding

https://github.com/malonge/RagTagdoi: 10.1186/s13059-022-02823-7License: MIT
Authors