Description

offers 3 pre-defined registration schemes 1) Rigid, 2) Rigid+Affine 3) Rigid+Affine+Bsplines, each of them providing more geometrical adaptability and thus more control in the final outcome.

Input

Name
Description
Pattern

0 ()

1 ()

2 ()

0 ()

1 ()

ifix (string)

Integer or string h,e,d. 0-based index of channel to be used for registration. If string it converts your H&E into Hematoxylin, Eosin or DAB. fixed image stack

imov (string)

Integer or string h,e,d. 0-based index of channel to be used for registration. If string it converts your H&E into Hematoxylin, Eosin or DAB. moving image stack

mpp_fix (float)

Pixel size of the fixed image in micrometers

mpp_mov (float)

Pixel size of the moving image in micrometers

mpp_reg (float)

Image resolution in micrometers to be used for applying the registration scheme

Output

Name
Description
Pattern

0 ()

0 ()

0 ()

Tools

rami2d Documentation

Robust Alignment of Multichannel Images in 2D

License: BSD-3-Clause
Authors