Description

Produces a Newick format phylogeny from a multiple sequence alignment using a Neighbour-Joining algorithm. Capable of bacterial genome size alignments.

Input

Name
Description
Pattern

0 ()

Output

Name
Description
Pattern

stockholm_alignment ()

phylogeny ()

versions ()

Tools

rapidnj Documentation

RapidNJ is an algorithmic engineered implementation of canonical neighbour-joining. It uses an efficient search heuristic to speed-up the core computations of the neighbour-joining method that enables RapidNJ to outperform other state-of-the-art neighbour-joining implementations.

https://github.com/somme89/rapidNJdoi: 10.1007/978-3-540-87361-7_10License: GPL v2
Authors