Description

Create a directory with clean BUSCO outputs

Input

Name
Description
Pattern

meta (map)

Groovy Map containing sample information e.g. [ id:'sample1' ]

lineage (string)

The BUSCO lineage to use, or "auto", "auto_prok" or "auto_euk" to automatically select lineage

batch_summary (file)

Summary of all sequence files analyzed

*-busco.batch_summary.txt

short_summary_txt (file)

Short Busco summary in plain text format

short_summary.*.txt

short_summary_json (file)

Short Busco summary in JSON format

short_summary.*.json

full_table (file)

Full BUSCO results table

full_table.tsv

missing_busco_list (file)

List of missing BUSCOs

missing_busco_list.tsv

seq_dir (directory)

BUSCO sequence directory

busco_sequences

Output

Name
Description
Pattern

clean_busco_dir

meta (map)

Groovy Map containing sample information e.g. [ id:'sample1' ]

${lineage} (directory)

BUSCO results directory

versions_restructurebuscodir

${task.process} (string)

The name of the process

restructurebuscodir (string)

The name of the tool

echo 1.0 (eval)

The expression to obtain the version of the tool

Topics

Name
Description
Pattern

versions

${task.process} (string)

The name of the process

restructurebuscodir (string)

The name of the tool

echo 1.0 (eval)

The expression to obtain the version of the tool

Tools

coreutils Documentation

GNU coreutils provides standard utilities such as paste and tr used during conversion.

License: GPL-3.0-or-later

tar Documentation

GNU tape archive program

License: GPL-3.0-or-later
Pipelines with this module
blobtoolkitbusco
Authors