modules/
rpbp_selectfinalpredictionset

Produce the final filtered set of predicted translated ORFs from the per-ORF Bayes factor table. Applies the standard Rp-Bp prediction rules: a minimum Bayes-factor cutoff (favouring translated over untranslated), a minimum ORF length, and overlap resolution so that among overlapping candidates only the highest-scoring representative is kept.

Emits three files describing the same prediction set: a BED of ORF genomic coordinates plus score, a FASTA of ORF DNA sequences (extracted from the genome FASTA), and a FASTA of the corresponding translated protein sequences. This is the terminal step of the Rp-Bp per-sample chain.

rpbp orf bayes prediction riboseq