Description

The VCFeval tool of RTG tools. It is used to evaluate called variants for agreement with a baseline variant set

Input

Name
Description
Pattern

0 ()

1 ()

2 ()

3 ()

4 ()

5 ()

6 ()

0 ()

1 ()

Output

Name
Description
Pattern

tp_vcf ()

tp_tbi ()

fn_vcf ()

fn_tbi ()

fp_vcf ()

fp_tbi ()

baseline_vcf ()

baseline_tbi ()

snp_roc ()

non_snp_roc ()

weighted_roc ()

summary ()

phasing ()

versions ()

Tools

rtgtools Documentation

RealTimeGenomics Tools -- Utilities for accurate VCF comparison and manipulation

https://github.com/RealTimeGenomics/rtg-toolsLicense: BSD
Authors