Description

gene/transcript quantification with Salmon

Input

Name
Description
Pattern

0 ()

1 ()

index (directory)

Folder containing the star index files

gtf (file)

GTF of the reference transcriptome

transcript_fasta (file)

Fasta file of the reference transcriptome

alignment_mode (boolean)

whether to run salmon in alignment mode

lib_type (string)

Override library type inferred based on strandedness defined in meta object

Output

Name
Description
Pattern

0 ()

0 ()

0 ()

0 ()

Tools

salmon Documentation

Salmon is a tool for wicked-fast transcript quantification from RNA-seq data

doi: 10.1038/nmeth.4197License: GPL-3.0-or-later
Authors