Description

SALSA, A tool to scaffold long read assemblies with HiC

Input

Name
Description
Pattern

0 ()

1 ()

2 ()

bed (file)

BED file of alignments sorted by read names, e.g., from HiC-Pro

*.{bed}

gfa (file)

GFA file of the assembly graph

dup (file)

File containing the duplicated contigs

filter_bed (file)

BED file of the filtered alignments

*.{bed}

Output

Name
Description
Pattern

0 ()

0 ()

0 ()

0 ()

Tools

salsa2 Documentation

Salsa is a tool to scaffold long read assemblies with Hi-C.

doi: 10.1186/s12864-017-3879-zLicense: MIT
Authors