Description

mtDNA deletion and duplication calling downstream of mitosalt

Input

Name
Description
Pattern

0 ()

1 ()

2 ()

0 ()

1 ()

flank (integer)

Basepairs flanking a deletion

heteroplasmy_limit (float)

Minimum heteroplasmy level to report a deletion/duplication

mito_length (integer)

Length of the mitochondrial genome

heavy_strand_origin_start (integer)

Start position of the heavy strand origin of replication

heavy_strand_origin_end (integer)

End position of the heavy strand origin of replication

light_strand_origin_start (integer)

Start position of the light strand origin of replication

light_strand_origin_end (integer)

End position of the light strand origin of replication

Output

Name
Description
Pattern

0 ()

0 ()

Tools

saltshaker Documentation

A Python package for classifying and visualizing mitochondrial structural variants from MitoSAlt pipeline output.

Authors