Description

mtDNA deletion and duplication classification downstream of mitosalt

Input

Name
Description
Pattern

0 ()

1 ()

dominant_fraction (float)

Minimum heteroplasmy fraction to classify as dominant in saltshaker

group_radius (integer)

Spatial clustering radius for saltshaker grouping

high_heteroplasmy (float)

High heteroplasmy threshold for saltshaker classification

multiple_threshold (float)

Heteroplasmy threshold for multiple classification in saltshaker

noise_threshold (float)

Heteroplasmy threshold for noise in saltshaker classification

Output

Name
Description
Pattern

0 ()

0 ()

0 ()

0 ()

Tools

saltshaker Documentation

A Python package for classifying and visualizing mitochondrial structural variants from MitoSAlt pipeline output.

Authors