Description

Compare two Illumina SampleSheet.csv files (any combination of V1 and V2) and emit a structured JSON diff covering header changes, added/removed samples, and per-sample field changes. Exits 0 if identical, 1 if differences are detected — useful as a CI pre-run guard.

Input

Name
Description
Pattern

0 ()

1 ()

2 ()

Output

Name
Description
Pattern

0 ()

0 ()

Tools

samplesheet-parser Documentation

Format-agnostic parser for Illumina SampleSheet.csv files. Supports IEM V1 (bcl2fastq) and BCLConvert V2 with auto-detection, bidirectional conversion, index validation, and Hamming distance checking.

https://github.com/chaitanyakasaraneni/samplesheet-parserdoi: 10.5281/zenodo.18989694License: Apache-2.0
Authors