Description

Merge multiple per-project Illumina SampleSheet.csv files into one combined sheet. Detects index collisions, Hamming distance violations, and read-length mismatches across sheets. Mixed V1/V2 inputs are auto-converted to the target format. Exits 0 on clean merge, 1 if conflicts or warnings were found.

Input

Name
Description
Pattern

0 ()

1 ()

target_version (string)

Output format — either 'v1' or 'v2'

Output

Name
Description
Pattern

0 ()

0 ()

0 ()

Tools

samplesheet-parser Documentation

Format-agnostic parser for Illumina SampleSheet.csv files. Supports IEM V1 (bcl2fastq) and BCLConvert V2 with auto-detection, bidirectional conversion, index validation, and Hamming distance checking.

https://github.com/chaitanyakasaraneni/samplesheet-parserdoi: 10.5281/zenodo.18989694License: Apache-2.0
Authors