Description

The module uses bam2fq method from samtools to convert a SAM, BAM or CRAM file to FASTQ format

Input

Name
Description
Pattern

0 ()

1 ()

split (boolean)

TRUE/FALSE value to indicate if reads should be separated into /1, /2 and if present other, or singleton. Note: choosing TRUE will generate 4 different files. Choosing FALSE will produce a single file, which will be interleaved in case the input contains paired reads.

Output

Name
Description
Pattern

0 ()

0 ()

Tools

samtools Documentation

Tools for dealing with SAM, BAM and CRAM files

License: MIT
Authors