Description

The module uses collate and then fastq methods from samtools to convert a SAM, BAM or CRAM file to FASTQ format

Input

Name
Description
Pattern

0 ()

1 ()

0 ()

1 ()

0 ()

Output

Name
Description
Pattern

fastq ()

fastq_interleaved ()

fastq_other ()

fastq_singleton ()

versions ()

Tools

samtools Documentation

Tools for dealing with SAM, BAM and CRAM files

https://github.com/samtools/samtoolsdoi: 10.1093/bioinformatics/btp352License: MIT
Authors