Description

The module uses collate and then fastq methods from samtools to convert a SAM, BAM or CRAM file to FASTQ format

Input

Name
Description
Pattern

0 ()

1 ()

0 ()

1 ()

interleave (boolean)

If true, the output is a single interleaved paired-end FASTQ If false, the output split paired-end FASTQ

Output

Name
Description
Pattern

0 ()

0 ()

0 ()

0 ()

0 ()

Tools

samtools Documentation

Tools for dealing with SAM, BAM and CRAM files

https://github.com/samtools/samtoolsdoi: 10.1093/bioinformatics/btp352License: MIT
Authors