Description

Converts a SAM/BAM/CRAM file to FASTA

Input

Name
Description
Pattern

0 ()

1 ()

interleave (boolean)

Set true for interleaved fasta files

Output

Name
Description
Pattern

0 ()

0 ()

0 ()

0 ()

0 ()

Tools

samtools Documentation

Tools for dealing with SAM, BAM and CRAM files

https://github.com/samtools/samtoolsdoi: 10.1093/bioinformatics/btp352License: MIT
nf-core pipelines with this module
blobtoolkitreadmappingvariantcalling
Authors