Description

Filter cells and genes in single-cell RNA-seq data using Scanpy

Input

Name
Description
Pattern

0 ()

1 ()

min_genes (integer)

Minimum number of genes expressed per cell

min_cells (integer)

Minimum number of cells expressing each gene

min_counts_gene (integer)

Minimum number of counts per gene

min_counts_cell (integer)

Minimum number of counts per cell

max_mito_percentage (integer)

Maximum percentage of mitochondrial genes per cell

symbol_col (string)

Column name of the gene symbols in the var of the AnnData object. Use index if the gene symbols are the row names.

Output

Name
Description
Pattern

0 ()

0 ()

Tools

scanpy Documentation

Single-Cell Analysis in Python

https://github.com/scverse/scanpydoi: 10.1186/s13059-017-1382-0License: BSD-3-Clause
Authors