Description

Perform principal component analysis (PCA) on single-cell RNA-seq data using Scanpy

Input

Name
Description
Pattern

0 ()

1 ()

key_added (string)

Key to add to obsm with PCA coordinates, usually 'X_pca'

Output

Name
Description
Pattern

0 ()

0 ()

0 ()

Tools

scanpy Documentation

Single-Cell Analysis in Python

https://github.com/scverse/scanpydoi: 10.1186/s13059-017-1382-0License: BSD-3-Clause
Authors