Description

Call peaks using SEACR on sequenced reads in bedgraph format

Input

Name
Description
Pattern

0 ()

1 ()

2 ()

threshold (integer)

Threshold value used to call peaks if the ctrlbedgraph input is set to []. Set to 1 if using a control bedgraph

Output

Name
Description
Pattern

0 ()

0 ()

Tools

seacr Documentation

SEACR is intended to call peaks and enriched regions from sparse CUT&RUN or chromatin profiling data in which background is dominated by "zeroes" (i.e. regions with no read coverage).

License: GPL-2.0-only
Authors