Description

Accelerated implementation of the GATK DepthOfCoverage tool.

Input

Name
Description
Pattern

0 ()

1 ()

2 ()

0 ()

1 ()

0 ()

1 ()

0 ()

1 ()

0 ()

1 ()

Output

Name
Description
Pattern

per_locus ()

sample_summary ()

statistics ()

coverage_counts ()

coverage_proportions ()

interval_summary ()

versions ()

Tools

sentieon Documentation

Sentieon® provides complete solutions for secondary DNA/RNA analysis for a variety of sequencing platforms, including short and long reads. Our software improves upon BWA, STAR, Minimap2, GATK, HaplotypeCaller, Mutect, and Mutect2 based pipelines and is deployable on any generic-CPU-based computing system.

License: Commercial (requires license for use; redistribution allowed)
Authors