Description

Collects multiple quality metrics from a bam file

Input

Name
Description
Pattern

0 ()

1 ()

2 ()

0 ()

1 ()

0 ()

1 ()

0 ()

Output

Name
Description
Pattern

mq_metrics ()

qd_metrics ()

gc_summary ()

gc_metrics ()

aln_metrics ()

is_metrics ()

mq_plot ()

qd_plot ()

is_plot ()

gc_plot ()

versions ()

Tools

sentieon Documentation

Sentieon® provides complete solutions for secondary DNA/RNA analysis for a variety of sequencing platforms, including short and long reads. Our software improves upon BWA, STAR, Minimap2, GATK, HaplotypeCaller, Mutect, and Mutect2 based pipelines and is deployable on any generic-CPU-based computing system.

Authors