Description

DNAscope algorithm performs an improved version of Haplotype variant calling.

Input

Name
Description
Pattern

0 ()

1 ()

2 ()

3 ()

0 ()

1 ()

0 ()

1 ()

0 ()

1 ()

0 ()

1 ()

0 ()

1 ()

pcr_indel_model (string)

Controls the option pcr_indel_model for Dnascope. The possible options are "NONE" (used for PCR free samples), and "HOSTILE", "AGGRESSIVE" and "CONSERVATIVE". See Sentieons documentation for further explanation.

emit_vcf (string)

Controls the vcf output from Dnascope. Possible options are "all", "confident" and "variant". See Sentieons documentation for further explanation.

emit_gvcf (boolean)

If true, the haplotyper will output a gvcf

Output

Name
Description
Pattern

0 ()

0 ()

0 ()

0 ()

0 ()

Tools

sentieon Documentation

Sentieon® provides complete solutions for secondary DNA/RNA analysis for a variety of sequencing platforms, including short and long reads. Our software improves upon BWA, STAR, Minimap2, GATK, HaplotypeCaller, Mutect, and Mutect2 based pipelines and is deployable on any generic-CPU-based computing system.

Authors