Description

Tnhaplotyper2 performs somatic variant calling on the tumor-normal matched pairs.

Input

Name
Description
Pattern

0 ()

1 ()

2 ()

3 ()

0 ()

1 ()

0 ()

1 ()

0 ()

1 ()

0 ()

1 ()

0 ()

1 ()

0 ()

1 ()

0 ()

1 ()

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Output

Name
Description
Pattern

orientation_data ()

contamination_data ()

contamination_segments ()

stats ()

vcf ()

index ()

versions ()

Tools

sentieon Documentation

Sentieon® provides complete solutions for secondary DNA/RNA analysis for a variety of sequencing platforms, including short and long reads. Our software improves upon BWA, STAR, Minimap2, GATK, HaplotypeCaller, Mutect, and Mutect2 based pipelines and is deployable on any generic-CPU-based computing system.

Authors