Description

Tnhaplotyper2 performs somatic variant calling on the tumor-normal matched pairs.

Input

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Description
Pattern

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emit_orientation_data (boolean)

If true, the module will run the sentieon algorithm TNhaplotyper2 followed by the sentieon algorithm OrientationBias.

emit_contamination_data (boolean)

If true, the module will run the sentieon algorithm TNhaplotyper2 followed by the sentieon algorithm ContaminationModel.

Output

Name
Description
Pattern

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Tools

sentieon Documentation

Sentieon® provides complete solutions for secondary DNA/RNA analysis for a variety of sequencing platforms, including short and long reads. Our software improves upon BWA, STAR, Minimap2, GATK, HaplotypeCaller, Mutect, and Mutect2 based pipelines and is deployable on any generic-CPU-based computing system.

Authors